BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027A08LP1|AL428652
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig929 1172 0.0
>3x_Contig929
Length = 3696
Score = 1172 bits (591), Expect = 0.0
Identities = 597/599 (99%)
Strand = Plus / Minus
Query: 1 ggttaactacaggtatttctgctccattctctgtcatctgtcgtttattgcagtctcgtt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1817 ggttaactacaggtatttctgctccattctctgtcatctgtggtttattgcagtctcgtt 1758
Query: 61 tcttgtttgatctctactgcaacggtggtgagcagaattcgtaaagtaaaattgaagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 tcttgtttgatctctactgcaacggtggtgagcagaattcgtaaagtaaaattgaagcac 1698
Query: 121 aggcagtgcacctatccttgatctgttcgatatacccctgctaaatcttcaaagtttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1697 aggcagtgcacctatccttgatctgttcgatatacccctgctaaatcttcaaagtttaga 1638
Query: 181 acaggtaaacgtacaaataagaagaaaatcaccaaaacctttatgtgctattacagttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1637 acaggtaaacgtacaaataagaagaaaatcaccaaaacctttatgtgctattacagttgc 1578
Query: 241 tgacagctactctgtttaaagtgctataggcactttgtactcgtcctttcacgcacgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 tgacagctactctgtttaaagtgctataggcactttgtactcgtcctttcacgcacgaaa 1518
Query: 301 acacacagcttccttcgtgaagaactaactgattataactgattaccttagtttagtttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 acacacagcttccttcgtgaagaactaactgattataactgattaccttagtttagtttt 1458
Query: 361 tttcgtaaaacagagatactcatgagcattctgtgtggaaaacaagaaaaaagcatcacg 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 tatcgtaaaacagagatactcatgagcattctgtgtggaaaacaagaaaaaagcatcacg 1398
Query: 421 tgctgcattcagaacatgatcctcccagtcatcaggttacggttacgtaaggcatggaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 tgctgcattcagaacatgatcctcccagtcatcaggttacggttacgtaaggcatggaat 1338
Query: 481 aagataaaactaattatatttgcatagattgatattcctggtacctgtggttagaagcgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 aagataaaactaattatatttgcatagattgatattcctggtacctgtggttagaagcgt 1278
Query: 541 ccatcgccacggccaccatggccgccaggaccgccgggaccgccatggccaccgaaacc 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 ccatcgccacggccaccatggccgccaggaccgccgggaccgccatggccaccgaaacc 1219
Score = 377 bits (190), Expect = e-104
Identities = 213/218 (97%), Gaps = 2/218 (0%)
Strand = Plus / Minus
Query: 657 ggagccaccaaa-accaccaaagccaccaaagccactagacccactagacccactgaaat 715
|||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 1161 ggagccaccaaataccactaaatccaccaaagccactagacccacgagacccactgaaat 1102
Query: 716 ggctttcgttatgcttcttatcatggtgagatgacatcgcatgtgatagcaatgatccgg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 ggctttcgttatgcttcttatcatggtgagatgacatcgcatgtgatagcaatgatccgg 1042
Query: 776 ccaacagacc-ggtaccaataccagcgatacctcctagcacagtactcccgtagcccttg 834
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ccaacagaccgggtaccaataccagcgatacctcctagcacagtactcccgtagcccttg 982
Query: 835 gatgctttctgctgttcctgtggttgggccgttccttg 872
||||||||||||||||||||||||||||||||||||||
Sbjct: 981 gatgctttctgctgttcctgtggttgggccgttccttg 944
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5093
Number of Sequences: 1807
Number of extensions: 5093
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)